Mapping A Fruit Fly’s Brain With Crowdsourced Research

Example of a graph representation of one identified network with connections coded by neurotransmitter types. (Credit: Amy Sterling, Murthy and Seung Labs, Princeton University)
Example of a graph representation of one identified network with connections coded by neurotransmitter types. (Credit: Amy Sterling, Murthy and Seung Labs, Princeton University)

Compared to the human brain, a fruit fly (Drosophila melanogaster) brain is positively miniscule, not only in sheer volume, but also with a mere 140,000 or so neurons and 50 million synapses. Despite this relative simplicity, figuring out how the brain of such a tiny fly works is still an ongoing process. Recently a big leap forward was made thanks to crowdsourced research, resulting in the FlyWire connectome map. Starting with high-resolution electron microscope data, the connections between the individual neurons (the connectome) was painstakingly pieced together, also using computer algorithms, but with validation by a large group of human volunteers using a game-like platform called EyeWire to perform said validation.

This work also includes identifying cell types, with over 8,000 different cell types identified. Within the full connectome subcircuits were identified, as part of an effort to create an ‘effectome’, i.e. a functional model of the physical circuits. With the finished adult female fruit fly connectome in hand, groups of researchers can now use it to make predictions and put these circuits alongside experimental contexts to connect activity in specific parts of the connectome to specific behavior of these flies.

Perhaps most interesting is how creating a game-like environment made the tedious work of reverse-engineering the brain wiring into something that the average person could help with, drastically cutting back the time required to create this connectome. Perhaps that crowdsourced research can also help with the ongoing process to map the human brain, even if that ups the scale of the dataset by many factors. Until we learn more, at this point even comprehending a fruit fly’s brain may conceivably give us many hints which could speed up understanding the human brain.

Featured image: “Drosophila Melanogaster Proboscis” by [Sanjay Acharya]

Gift Your Next Robot With The Brain Of A Roundworm

A group of developers called [OpenWorm] have mapped the 302 neurons of the Caenorhabditis elegans species of roundworm and created a virtual neural network that can be used to solve all the types of problems a worm might encounter. Which, when you think about it, aren’t much different from those a floor-crawling robots would be confronted with.

wormy

In a demo video released by one of the projects founders, [Timothy Busbice], their network is used to control a small Lego-rover equipped with a forward sonar sensor. The robot is able to stop before it hits a wall and determine an appropriate response, which may be to stop, back up, or turn. This is all pretty fantastic when you compare these 302 neural connections to any code you’ve ever written to accomplish the same task! It might be a much more complex route to the same outcome, but its uniquely organic… which makes watching the little Lego-bot fascinating; its stumbling around even looks more like thinking than executing.

I feel obligated to bring up the implications of this project. Since we’re all thinking about it now, let’s all imagine the human brain similarly mapped and able to simulate complex thought processes. If we can pull this off one day, not only will we learn a lot more about how our squishy grey hard drives process information, artificial intelligence will also improve by leaps and bounds. An effort to do this is already in effect, called the connectome project, however since there are a few more connections to map than with the c. elegans’ brain, it’s a feat that is still underway.

The project is called “open”worm, which of course means you can download the code from their website and potentially dabble in neuro-robotics yourself. If you do, we want to hear about your wormy brain bot.

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