How Octopuses Hacked Their Ribosome To Become Smart

A fascinating aspect in evolutionary biology is that of convergent evolution — whereby similar structures and functions evolve independently from each other. The highly advanced nervous system of octopuses is a good example here, displaying levels of intelligence and capabilities far beyond those of other cephalopods and matching that of primates, despite no evolutionary link here. Exactly how octopuses developed this rather unique capability remained a mystery, though recent research by [Rishav Mitra] points at the rather unique ribosomes in these animals.

Ribosomes are the molecular machinery at the core of each cell that enable the synthesis of proteins. Due to their highly crucial role, they tend to remain evolutionary unchanged, which makes the big change observed in the octopus (i.e. order Octopoda) in the form of this H88 rRNA break quite remarkable.

Common octopus (<i>Octopus vulgaris</i>). (Credit: Albert Kok, Wikimedia)
Common octopus (Octopus vulgaris). (Credit: Albert Kok, Wikimedia)

This H88 break increases the accuracy of translated proteins, something that is essential for complex nervous systems as it reduces cases of misfolded proteins (proteinopathy). Because of how well-preserved ribosomes are across species, the researchers were able to run a number of experiments including a similar rRNA break in E. coli that confirmed many of the assumptions about how these octopus ribosomes performed.

Since proteinopathy results in misfolded proteins that are either useless or harmful to the organism – as seen in various human diseases – this can especially harm long-lived cells like neurons. Unsurprisingly, we can see a similar change to ribosomes in other animal groups, including that of us primates. Although the reasons for octopuses to develop more complex nervous systems wasn’t due to social pressures but rather to cope with highly complex and dynamic environments, it would seem that both types of environmental pressures led to the same convergent path, with a little ribosomal help.

So What Is Protein Folding, Anyway?

The current COVID-19 pandemic is rife with problems that hackers have attacked with gusto. From 3D printed face shields and homebrew face masks to replacements for full-fledged mechanical ventilators, the outpouring of ideas has been inspirational and heartwarming. At the same time there have been many efforts in a different area: research aimed at fighting the virus itself.

Getting to the root of the problem seems to have the most potential for ending this pandemic and getting ahead of future ones, and that’s the “know your enemy” problem that the distributed computing effort known as Folding@Home aims to address. Millions of people have signed up to donate cycles from spare PCs and GPUs, and in the process have created the largest supercomputer in history.

But what exactly are all these exaFLOPS being used for? Why is protein folding something to direct so much computational might toward? What’s the biochemistry behind this, and why do proteins need to fold in the first place? Here’s a brief look at protein folding: what it is, how it happens, and why it’s important.

Continue reading “So What Is Protein Folding, Anyway?”