Guerrilla Grafters Grow Great Gifts For Greater Good

December 19, 2015 by Bryan Cockfield 59 Comments

If you’ve been to downtown San Francisco lately, you might have noticed something odd about the decorative trees in the city: they’re now growing fruit. This is thanks to a group of people called the Guerrilla Grafters who are covertly grafting fruit-bearing twigs to city tress which would otherwise be fruitless. Their goal is to create a delicious, free source of food for those living in urban environments.

Biology-related hacks aren’t something we see every day, but they’re out there. For those unfamiliar with grafting, it’s a process that involves taking the flowering, fruiting, or otherwise leafy section of one plant (a “scion”) and attaching them to the vascular structure of another plant that has an already-established root system (the “stock”). The Guerrilla Grafters are performing this process semi-covertly and haven’t had any run-ins with city officials yet, largely due to lack of funding on the city’s part to maintain the trees in the first place.

This hack doesn’t stop at the biological level, though. The Grafters have to keep detailed records of which trees the scions came from, when the grafts were done, and what characteristics the stock trees have. To keep track of everything they’ve started using RFID tags. This is an elegant solution that can be small and inconspicuous, and is a reliable way to keep track of all of one’s “inventory” of trees and grafts.

It’s great to see a grassroots movement like this take off, especially when it seems like city resources are stretched so thin that the trees may have been neglected anyway. Be sure to check out their site if you’re interested in trying a graft yourself. If you’re feeling really adventurous, you can take this process to the extreme.

Thanks to [gotno] for the tip!

Biomimicry Challenge: Hack Like Mother Nature, Win $100k

November 26, 2015 by Dan Maloney 7 Comments

Hot on the heels of the 2015 Hackaday prize, with its theme of “Build stuff that matters”, comes another opportunity for hackers to make a difference. But you’ve got to think like Mother Nature for the 2016 Biomimicry Global Design Challenge.

The aim of this challenge is to transform the global food system using sustainable approaches that emulate natural process. Entries must address a problem somewhere in the food supply chain, a term that could apply to anything from soil modification to crop optimization to harvest and storage technologies. Indeed, the 2015 winner in the Student category was for a passive refrigeration system to preserve food in undeveloped areas. It’s a clever two-stage system that uses an evaporative cooling loop inspired by the way an elephant’s ears cool the giant beast, and by use of a wind-capturing funnel that mimics how animals as diverse as termites and meerkats cool their nests.

In addition to the Student category, the challenge has an Open category for teams of any composition. Up to 10 teams will be selected from the Open category to proceed to the Accelerator phase, where they’ll receive support for a six to nine month development of their design into a marketable product. The winner will be awarded the $100,000USD Ray of Hope prize, endowed by the Ray C. Anderson Foundation.

We’d love to see someone from the Hackaday community take home the 2016 prize, and there are plenty of 2015 Hackaday Prize entries that may be eligible. The deadline for submissions is 11 May 2016, so get a team together and get to work.

Open Hardware For Open Science – Interview With Charles Fracchia

April 8, 2015 by Aleksandar Bradic 14 Comments

Open Science has been a long-standing ideal for many researchers and practitioners around the world. It advocates the open sharing of scientific research, data, processes, and tools and encourages open collaboration. While not without challenges, this mode of scientific research has the potential to change the entire course of science, allowing for more rigorous peer-review and large-scale scientific projects, accelerating progress, and enabling otherwise unimaginable discoveries.

As with any great idea, there are a number of obstacles to such a thing going mainstream. The biggest one is certainly the existing incentive system that lies at the foundation of the academic world. A limited number of opportunities, relentless competition, and pressure to “publish or perish” usually end up incentivizing exactly the opposite – keeping results closed and doing everything to gain a competitive edge. Still, against all odds, a number of successful Open Science projects are out there in the wild, making profound impacts on their respective fields. HapMap Project, OpenWorm, Sloan Digital Sky Survey and Polymath Project are just a few to name. And the whole movement is just getting started.

While some of these challenges are universal, when it comes to Biology and Biomedical Engineering, the road to Open Science is paved with problems that will go beyond crafting proper incentives for researchers and academic institutions.

It will require building hardware.

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Mediated Matter At The MIT Media Lab

March 27, 2015 by Aleksandar Bradic 17 Comments

Few things have managed to capture the imagination of hackers and engineers around the world the way Synthetic Biology did over the last couple of years. The promise of “applying engineering principles to designing new biological devices and systems” just seemed way too sci-fi to missed out on, and everyone jumped on the bandwagon. All of a sudden, the field which used to be restricted to traditional research organizations and startups found itself crowded with all sorts of enthusiasts, biohackers, and weirdos alike. Competitions such as the International Genetically Engineered Machine (iGEM) paved the way, and the emergence of community spaces like GenSpace and BioCurious finally made DNA experimentation accessible to anyone who dares to try. As it often happens, the Sci-Fi itself did not go untouched, and a whole new genre called “Biopunk” emerged, further fueling people’s imagination and extrapolating worlds to come.

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Take Your Samples For A Spin With The RWXBioFuge

October 21, 2014 by Theodora Fabio 14 Comments

We have a confession to make: we love centrifuges. We’ve used all shapes and sizes, for spinning bags of whole blood into separate components to extracting DNA, and everything in between. Unfortunately, these lab staples are too expensive for many DIY-biologists unless they buy them used or build them themselves. [Pieter van Boheemen] was inspired by other DIY centrifuges and decided to make his own, which he named the RWXBioFuge.

[Pieter] designed the RWXBioFuge using Sketchup, OpenSCAD, and InkScape. It features a Thermaltake SMART M850W ATX power supply, an R/C helicopter Electronic Speed Controller (ESC), and brushless outrunner motor. For user output it utilizes a 16×2 LCD character display with an I2C interface.The frame is laser-cut from 3mm MDF while the 3D-printed PLA rotor was designed with OpenSCAD.

An Arduino handles the processing side of things. [Pieter] used an Arduino Ethernet – allowing a web interface to control the centrifuge’s settings and operation from a distance. We can see this being useful in testing out the centrifuge for any rotor/motor balance issues, especially since [Pieter] states that it can be configured to run >10,000 rpm. We wouldn’t want to be in the room if pieces start flying off any centrifuge at that speed! However, we feel that when everything’s said and done, you should have a centrifuge you can trust by your side when you’re at your lab bench.

While there are similarities to the Openfuge, the larger RWXBioFuge has rotor capacities of eight to twenty 1.5-2.0ml microcentrifuge tubes. Due to the power supply, it is not portable and a bit more expensive, but not incredibly so. There are some small touches about this centrifuge that we really like. The open lid detector is always a welcome safety feature. The “Short” button is very handy for quick 5-10 second spins.

A current version of the RWXBioFuge is being used at the Waag Society’s Open Wetlab. [Pieter’s] planned upgrades for the next version include a magnetic lid lock, different rotor sizes, an accelerometer to detect an improperly balanced rotor, and optimizing the power supply, ESC, and motor setup. You can never have enough centrifuges in a lab, and we are looking forward to seeing this project’s progress!

Check out a few more pictures of the RWXBioFuge after the break.

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OpenFuge: An Open-source Centrifuge

September 23, 2013 by Marsh 24 Comments

openFuge

Biohackers, fire up your laser cutters. [CopabX] has developed OpenFuge: a (relatively) low-cost, open-source centrifuge from powerful hobby electronic components. If you thought the VCR centrifuge wasn’t impressive, trolls be damned— OpenFuge can crank out 9000 RPM and claims it’s capable of an impressive 6000 G’s. [CopabX] also worked in adjustable speed and power, setting time durations, and an LCD to display live RPM and countdown stats.

And it’s portable. Four 18650 lithium cells plug into the back, making this centrifuge a truly unique little build. The muscle comes from a DC outrunner brushless motor similar to the ones that can blast you around on a skateboard but with one key difference; an emphasis on RPMs over torque. We’re not sure exactly which motor is pictured, but one suggestion on the bill of materials boasts a 6000 KV rating, and despite inevitable losses, that’s blazing fast at nearly 15V.

You’ll want to see the demonstration video after the break, but also make time to swing by Thingiverse for schematics and recommended parts.

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VCR Centrifuge

September 21, 2013 by Marsh 33 Comments

VCR’s practically scream “tear me open!” with all those shiny, moving parts and a minimal risk that you’re going to damage a piece of equipment that someone actually cares about. Once you’ve broken in, why not hack it into a centrifuge like [Kymyst]? Separating water from the denser stuff doesn’t require lab-grade equipment. As [Kymyst] explains: you can get a force of 10 G just spinning something around your head. By harvesting some belt drives from a few VCR’s, however, he built this safer, arm-preserving motor-driven device.

[Kymst] dissected the video head rotor and cassette motor drive down to a bare minimum of parts which were reassembled in a stack. A bored-out old CD was attached beneath the rotor while a large plastic bowl was bolted onto the CD. The bowl–here a microwave cooking cover–acts as a protective barrier against the tubes spinning inside. The tube carriers consist of plastic irrigation tubing fitted with a homemade trunnion, which [Kymyst] fashioned from some self-tapping screws and a piece of PVC. At 250 rpm, this centrifuge reaches around 6 G and best of all, gives a VCR something to do again. Take a look at his guide and make your own, particularly if your hackerspace has a bio lab.