Cryo-EM: Freezing Time To Take Snapshots Of Myosin And Other Molecular Systems

Using technologies like electron microscopy (EM) it is possible to capture molecular mechanisms in great detail, but not when these mechanisms are currently moving. The field of cryomicroscopy circumvents this limitation by freezing said mechanism in place using cryogenic fluids. Although initially X-ray crystallography was commonly used, the much more versatile EM is now the standard approach in the form of cryo-EM, with recent advances giving us unprecedented looks at the mechanisms that quite literally make our bodies move.

Myosin-5 working stroke and walking on F-actin. (Credit: Klebl et al., 2024)
Myosin-5 working stroke and walking on F-actin. (Credit: Klebl et al., 2024)

The past years has seen many refinements in cryo-EM, with previously quite manual approaches shifting to microfluidics to increase the time resolution at which a molecular process could be frozen, enabling researchers to for example see the myosin motor proteins go through their motions one step at a time. Research articles on this were published previously, such as by [Ahmet Mentes] and colleagues in 2018 on myosin force sensing to adjust to dynamic loads. More recently, [David P. Klebl] and colleagues published a research article this year on the myosin-5 powerstroke through ATP hydrolysis, using a modified (slower) version of myosin-5. Even so, the freezing has to be done with millisecond accuracy to capture the myosin in the act of priming (pre-powerstroke).

The most amazing thing about cryo-EM is that it allows us to examine processes that used to be the subject of theory and speculation as we had no means to observe the motion and components involved directly. The more we can increase the time resolution on cryo-EM, the more details we can glimpse, whether it’s the functioning of myosins in muscle tissue or inside cells, the folding of proteins, or determining the proteins involved in a range of diseases, such as the role of TDP-43 in amytrophic lateral sclerosis (ALS) in a 2021 study by [Diana Arseni] and colleagues.

As our methods of freezing these biomolecular moments in time improve, so too will our ability to validate theory with observations. Some of these methods combine cryogenic freezing with laser pulses to alternately freeze and resume processes, allowing processes to be recorded in minute detail in sub-millisecond resolution. One big issue that remains yet is that although some of these researchers have even open sourced their cryo-EM methods, commercial vendors have not yet picked up this technology, limiting its reach as researchers have to cobble something together themselves.

Hopefully before long (time-resolved) cryo-EM will be as common as EM is today, to the point where even a hobby laboratory may have one lounging around.

Heating Mars On The Cheap

Mars is fairly attractive as a potential future home for humanity. It’s solid, with firm land underfoot. It’s able to hang on to a little atmosphere, which is more than you can say about the moon. It’s even got a day/night cycle remarkably close to our own. The only problem is it’s too darn cold, and there’s not a lot of oxygen to breathe, either.

Terraforming is the concept of fixing problems like these on a planet-wide scale. Forget living in domes—let’s just make the whole thing habitable!

That’s a huge task, so much current work involves exploring just what we could achieve with today’s technology. In the case of Mars, [Casey Handmer] doesn’t have a plan to terraform the whole planet. But he does suggest we could potentially achieve significant warming of the Red Planet for $10 billion in just 10 years. Continue reading “Heating Mars On The Cheap”

An image of the surface of Europa. The top half of the sphere is illuminated with the bottom half dark. The surface is traced with lineae, long lines across its surface of various hues of grey, white, and brown. The surface is a brown-grey, somewhat like Earth's Moon with the highest brightness areas appearing white.

Europa Clipper Asks Big Questions Of The Jovian Moon

Are we alone? While we certainly have lots of strange lifeforms to choose from as companions here on our blue marble, we have yet to know if there’s anything else alive out there in the vastness of space. One of the most promising places to look in our own solar neighborhood is Europa.

People in bunny suits swarm underneath the main section of the Europa Clipper. It is predominantly white, with various tubes and structures of silver metal protruding and many pieces of yellow kapton tape are visible. A large orange module is strapped to the side around the middle of the semi-cylindrical craft. Several other dark orange metallic plates that are much smaller adorn various pieces of the craft. It looks both chonky and delicate at the same time. Underneath its icy surface, Europa appears to have a sea that contains twice as much water as we have here on Earth. Launching later this year and arriving in 2030, NASA’s Europa Clipper will provide us with our most up-close-and-personal look at the Jovian Moon yet. In conjunction with observations from the ESA’s Jupiter Icy Moons Explorer (JUICE), scientists hope to gain enough new data to see if the conditions are right for life.

Given the massive amounts of radiation in the Jovian system, Europa Clipper will do 50 flybys of the moon over the course of four years to reduce damage to instruments as well as give it windows to transmit data back to Earth with less interference. With enough planning and luck, the mission could find promising sites for a future lander that might be able to better answer the question of if there actually is life on other worlds.

Some of the other moons around Jupiter could host life, like Io. Looking for life a little closer? How about on our nearest neighbor, Venus, or the ever popular Mars?

A Supercapacitor From Mushrooms

The supercapacitor is an extremely promising energy storage technology, and though they have yet to reach parity with the best batteries in terms of energy density, offers considerable promise for a future of safe and affordable energy storage. Perhaps best of all from our point of view, they are surprisingly simple to make. A practical supercapacitor can be made on the bench by almost anyone, as the ever-resourceful [Robert Murray-Smith] demonstrates using mushrooms as his feedstock.

The idea of a supercapacitor is to replace the flat plate on the simple capacitor from your physics textbook with one that has as large a surface area as possible for charge to accumulate on. In this case the surface is formed from organic charcoal, a substance which retains something of the microscopic structure of whatever it was made from. Mushrooms are a good feedstock, because their mycelium structure has a naturally huge surface area. He takes us in the video below the break through the process of carbonizing them, much easier when you have a handy kiln than trying the charcoal-burner method, and then grinds them to a powder before applying them as a paste with a binder to a piece of graphite foil. With two of these electrodes and a piece of paper towel as a dielectric, he demonstrates a simple benchtop supercapacitor running a small electric motor for a surprisingly longer time than we expected.

We’d like to see further work on home made supercapacitors, as we believe they have immense potential as well as storing the stuff. Meanwhile, this is by no means the most unexpected supercapacitor material we’ve seen.

Continue reading “A Supercapacitor From Mushrooms”

Using Electroadhesion To Reversibly Adhere Metals And Graphite To Hydrogels And Tissues

The usual way to get biological tissues and materials like gels and metals to stick together is using sutures, adhesives or both. Although this generally works, it’s far from ideal, with adhesives forming a barrier layer between tissues and the hard or impossible to undo nature of these methods. A viable alternative might be electroadhesion using cation and anion pairs, which uses low-voltage DC to firmly attach the two sides, with polarity reversal loosening the connection with no permanent effects. This is what a group of researchers have been investigating for a few years now, with the most recent paper on the topic called Reversibly Sticking Metals and Graphite to Hydrogels and Tissues by [Wenhao Xu] and colleagues published this year in ACS Central Science.

This follows on the 2021 study published in Nature Communications by [Leah K. Borden] and colleagues titled Reversible electroadhesion of hydrogels to animal tissues for suture-less repair of cuts or tears. In this study a cationic hydrogel (quaternized dimethyl aminoethyl methacrylate, QDM) was reversibly bonded to bovine aorta and other tissues, with said tissues functioning as the anionic element. Despite demonstrated functionality, the exact mechanism which made the application of 3-10 VDC (80 – 125 mA) for under a minute (10+ seconds) cause both sides to bond so tightly, and reversibly, is still unknown. This is where the recent study provides a mechanism and expands the applications.

Continue reading “Using Electroadhesion To Reversibly Adhere Metals And Graphite To Hydrogels And Tissues”

Sort Of Electromagnet Attracts Copper, Aluminum

It is a common grade school experiment to wind some wire around a screw, power it up, and watch it pick up paper clips or other ferrous materials. It is also grade school science to show that neither an electromagnet nor a permanent magnet will pick up nonferrous items like copper or aluminum. While technically not an electromagnet, it is possible to build a similar device that will weakly pull on copper and aluminum, and [Cylo] shows us how it works in a recent video you can see below.

The device sure looks like an electromagnet made with magnet wire and a steel core. But when he shows the ends of the core, you’ll see that the side that attracts aluminum has a copper ring embedded in it. The coil is fed with AC.

The magnetic field from the coil induces an opposite field in the copper ring that is out of phase with the exciting field. The two fields combine to produce a force on the metal it interacts with. This is often referred to as a shaded pole, and the same technique can help AC motors self-start as well as hold in relays driven by AC. If you want to see much more about aluminum floating on a magnetic field, check out the 1975 video from [Professor Laithwaite] in the second video below.

You probably have a shaded pole AC motor in your microwave oven. Or, maybe,your old 8-track player.

Continue reading “Sort Of Electromagnet Attracts Copper, Aluminum”

Cosmic Ray Detection At Starbucks?

Want to see cosmic rays? You might need a lot of expensive exotic gear. Nah. [The ActionLab] shows how a cup of coffee or cocoa can show you cosmic rays — or something — with just the right lighting angle. Little bubbles on the surface of the hot liquid tend to vanish in a way that looks as though something external and fast is spreading across the surface.

To test the idea that this is from some external source, he takes a smoke detector with a radioactive sensor and places it near the coffee. That didn’t seem to have any effect. However, a Whimhurst machine in the neighborhood does create a big change in the liquid. If you don’t have a Whimhurst machine, you can rub a balloon on your neighbor’s cat.

Continue reading “Cosmic Ray Detection At Starbucks?”