bioengineering

10 Articles

A researcher in a safety harness pollinates an American chestnut tree from a lift. Another researcher is on the other side of the lift and appears to be taking notes. The tree has bags over some of its branches, presumably to control the pollen that gets in. The lift has a grey platform and orange arm.

Hacking Trees To Bring Back The American Chestnut

November 29, 2024 by 34 Comments

“Chestnuts Roasting on an Open Fire” is playing on the radio now in the Northern Hemisphere which begs the question, “What happened to the American chestnut?” Would you be surprised to hear there’s a group dedicated to bringing it back from “functional extinction?” [via Inhabitat]

Between logging and the introduction of chestnut blight, the once prevalent American chestnut became increasingly uncommon throughout its traditional range in the Appalachians. While many trees in the southern range were killed by Phytophthora root rot (PRR), the chestnut blight leaves roots intact, so many chestnuts have been surviving by growing back from the roots only to succumb to the blight and be reborn again. Now, scientists are using a combination of techniques to develop blight-resistant trees from this remaining population.

The American Chestnut Foundation recognizes you can’t improve what you can’t measure and uses a combination of “small stem assays (SSAs) performed on potted seedlings, improved phenotype scoring methods for field-grown trees, and the use of genomic prediction models for scoring resistance based on genotype.” This allows them to more rapidly screen varieties for blight resistance to further their efforts. One approach is based on conventional plant breeding techniques and has been crossing blight and PRR-resistant Chinese chestnuts with the American type. PRR resistance has been found to be less genetically complicated, so progress has been faster on resistance to that particular problem. Continue reading “Hacking Trees To Bring Back The American Chestnut” →

An illustration of jellyfish swimming in the ocean by Rebecca Konte. The jellyfish are wearing cones on their "heads" to streamline their swimming that contain some sort of electronics inside.

The Six Million Dollar Jellyfish

March 1, 2024 by 14 Comments

What if you could rebuild a jellyfish: better, stronger, faster than it was before? Caltech now has the technology to build bionic jellyfish.

Studying the ocean given its influence on the rest of the climate is an important scientific task, but the wild pressure differences as you descend into the eternal darkness make it a non-trivial engineering problem. While we’ve sent people to the the deepest parts of the ocean, submersibles are much too expensive and risky to use for widespread data acquisition.

The researchers found in previous work that making a cyborg jellyfish was more effective than biomimetic jellyfish robots, and have now given the “biohybrid robotic jellyfish” a 3D-printed, neutrally buoyant, swimming cap. In combination with the previously-developed “pacemaker,” these cyborg jellyfish can explore the ocean (in a straight line) at 4.5x the speed of a conventional moon jelly while carrying a scientific payload. Future work hopes to make them steerable like the well-known robo-cockroaches.

If you’re interested in some other attempts to explore Earth’s oceans, how about drift buoys, an Open CTD, or an Open ROV? Just don’t forget to keep the noise down!

Continue reading “The Six Million Dollar Jellyfish” →

Get Your Leafy Meats

June 26, 2023 by 23 Comments

Some of us jokingly refer to our hobbies as “mad science,” but [Justin] from The Thought Emporium could be one Igor away from living up to the jibe. The latest project to come out of the YouTube channel, video also after the break, outlines a map for creating an artificial organism in their new lab. The purpose is to test how far a citizen scientist can push the boundary of bioengineering. The stated goal is to create a swimming entity with a skeleton. The Thought Emporium also has a neuron project in the works, hinting at a potential crossover.

The artifishal [sic] organism has themes at the micro and macro scale. [Justin] says, “Cells are like little nano-robots. Mainly in the sense that they just follow their built-in instructions to the best of their ability.” At the multi-cellular level, the goal is to program something to actuate muscle tissue rhythmically to sustain locomotion. The method for creating living parts is decellularization and recellularization, a technique we heard about at Hackaday Belgrade.

The Thought Emporium is improving upon its protocol which removes cells from their “scaffolding” to repopulate it with the desired type, muscle in this case. Cellular scaffolds retain the shape of whatever they were, so whatever grows on them determines what they become. Once the technique of turning a leaf into muscle fibers is mastered, the next step will be creating bones with a different cell line that will mineralize the scaffold. Optimizing the processes and combining the results may show the world what is possible with the dedication of citizen bioengineers.

Regenerative medicine is looking at replacement human-parts with similar techniques. We are eager to see fish that digest plastic.

Continue reading “Get Your Leafy Meats” →

A clear flexible PCB with a number of gold electrodes on one end. It is wrapped over a black cable to demonstrate its flexibility. A set of dashed white lines goes from one end to a zoomed in image of the circuit structure inset in the top right of the image.

Biohybrid Implant Patches Broken Nerves With Stem Cells

March 29, 2023 by 17 Comments

Neural interfaces have made great strides in recent years, but still suffer from poor longevity and resolution. Researchers at the University of Cambridge have developed a biohybrid implant to improve the situation.

As we’ve seen before, interfacing electronics and biological systems is no simple feat. Bodies tend to reject foreign objects, and transplanted nerves can have difficulty assuming new roles. By combining flexible electronics and induced pluripotent stem cells into a single device, the researchers were able to develop a high resolution neural interface that can selectively bind to different neuron types which may allow for better separation of sensation and motor signals in future prostheses.

As is typically the case with new research, the only patients to benefit so far are rats and only on the timescale of the study (28 days). That said, this is a promising step forward for regenerative neurology.

We’re no strangers to bioengineering here. Checkout how you can heal faster with electronic bandages or build a DIY vibrotactile stimulator for Coordinated Reset Stimulation (CRS).

(via Interesting Engineering)

Biological Hacking In The 19th Century Or How The World Almost Lost Wine

June 3, 2019 by 24 Comments

While it isn’t quite universal, a lot of people enjoy a glass of wine now and again. But the world faced a crisis in the 1800s that almost destroyed some of the world’s great wines. Science — or some might say hacking — saved the day, even though it isn’t well known outside of serious oenophiles. You might wonder how biological hacking occurred in the 19th century. It did. It wasn’t as fast or efficient, but fortunately for wine drinkers, it got the job done.

When people tell me about new cybersecurity threats, I usually point out that cybercrime isn’t new. People have been stealing money, tricking people into actions, and impersonating other people for centuries. The computer just makes it easier. Even computing itself isn’t a new idea. Counting on your fingers and counting with electrons is just a matter of degree. Surely, though, mashing up biology is a more recent scientific advancement, right? While it is true that CRISPR can make editing genes a weekend garage project, people have been changing the biology of plants and animals for centuries using techniques like selective breeding and grafting. Not as effective, but sometimes effective enough.

Continue reading “Biological Hacking In The 19th Century Or How The World Almost Lost Wine” →

Green Hacking: Overclocking Photosynthesis

January 5, 2019 by 30 Comments

We think of hacking as bending technology to our will. But some systems are biological,  and we’re also starting to see more hacking in that area. This should excite science fiction fans used to with reading about cultures that work with biological tech, so maybe we’ll get there in the real world too.  Hacking farm crops and animals goes back centuries, although we are definitely getting better at it. A case in point: scientists have found a way to make photosynthesis better and this should lead to more productive crops.

We learned in school that plants use carbon dioxide and sunlight to create energy and produce oxygen. But no one explained to us exactly how that happened. It seems a protein called rubisco is what causes this to happen, but unfortunately it isn’t very picky. In addition to converting carbon (from carbon dioxide) into sugar, it also converts oxygen into toxic compounds called ROS (reactive oxygen species) that most plants then have to spend energy eliminating. Scientists estimate that if you could recover the calories lost in this process, you could feed an additional 200 million people worldwide at current production levels.

Continue reading “Green Hacking: Overclocking Photosynthesis” →

Go Small, Get Big: The Hack That Revolutionized Bioscience

June 23, 2017 by 11 Comments

Few people outside the field know just how big bioscience can get. The public tends to think of fields like physics and astronomy, with their huge particle accelerators and massive telescopes, as the natural expressions of big science. But for decades, biology has been getting bigger, especially in the pharmaceutical industry. Specialized labs built around the automation equipment that enables modern pharmaceutical research would dazzle even the most jaded CERN physicist, with fleets of robot arms moving labware around in an attempt to find the Next Big Drug.

I’ve written before on big biology and how to get more visibility for the field into STEM programs. But how exactly did biology get big? What enabled biology to grow beyond a rack of test tubes to the point where experiments with millions of test occasions are not only possible but practically required? Was it advances in robots, or better detection methodologies? Perhaps it was a breakthrough in genetic engineering?

Nope. Believe it or not, it was a small block of plastic with some holes drilled in it. This is the story of how the microtiter plate allowed bioscience experiments to be miniaturized to the point where hundreds or thousands of tests can be done at a time.

Continue reading “Go Small, Get Big: The Hack That Revolutionized Bioscience” →