It was never unusual to have a CPU and an FPGA together. After all, each has different strengths and weaknesses. However, newer devices like the Xilinx Zynq have both a CPU and an FPGA in the same package. That means your design has to span hardware, FPGA configurations, and software. [Mitchell Orsucci] was using a Zynq device on a ArtyZ7-20 board and decided he wanted to use Linux to operate the ARM processor and provide user-space tools to interface with the FPGA and reconfigure it dynamically.
This sounds like a big project and it certainly isn’t trivial by any means. However, the Xilinx tools do a lot of the heavy lifting, including setting up the Linux kernel and a suitable root file system. The bulk of [Mitchell’s] work was in developing user space tools for Linux programs to interact with the FPGA hardware. You can see a short video demo below.