Behind The Scenes Of Folding@Home: How Do You Fight A Virus With Distributed Computing?

A great big Thank You to everyone who answered the call to participate in Folding@Home, helping to understand proteins interactions of SARS-CoV-2 virus that causes COVID-19. Some members of the FAH research team hosted an AMA (Ask Me Anything) session on Reddit to provide us with behind-the-scenes details. Unsurprisingly, the top two topics are “Why isn’t my computer doing anything?” and “What does this actually accomplish?”

The first is easier to answer. Thanks to people spreading the word — like the amazing growth of Team Hackaday — there has been a huge infusion of new participants. We could see this happening on the leader boards, but in this AMA we have numbers direct from the source. Before this month there were roughly thirty thousand regular contributors. Since then, several hundred thousands more started pitching in. This has overwhelmed their server infrastructure and resulted in what’s been termed a friendly-fire DDoS attack.

The most succinct information was posted by a folding support forum moderator.

Here’s a summary of current Folding@Home situation :
* We know about the work unit shortage
* It’s happening because of an approximately 20x increase in demand
* We are working on it and hope to have a solution very soon.
* Keep your machines running, they will eventually fold on their own.
* Every time we double our server resources, the number of Donors trying to help goes up by a factor of 4, outstripping whatever we do.

Why don’t they just buy more servers?

The answer can be found on Folding@Home donation FAQ. Most of their research grants have restrictions on how that funding is spent. These restrictions typically exclude capital equipment and infrastructure spending, meaning researchers can’t “just” buy more servers. Fortunately they are optimistic this recent fame has also attracted attention from enough donors with the right resources to help. As of this writing, their backend infrastructure has grown though not yet caught up to the flood. They’re still working on it, hang tight!

Computing hardware aside, there are human limitations on both input and output sides of this distributed supercomputer. Folding@Home need field experts to put together work units to be sent out to our computers, and such expertise is also required to review and interpret our submitted results. The good news is that our contribution has sped up their iteration cycle tremendously. Results that used to take weeks or months now return in days, informing where the next set of work units should investigate.

Continue reading “Behind The Scenes Of Folding@Home: How Do You Fight A Virus With Distributed Computing?”

SOLID Promises A New Approach To How The Web Works

As it stands on the modern Internet, your data is no longer your own. Your emails, photos, and posts all live on servers owned by large corporations. Their policies give them access to your data, which is mined to generate advertising revenue. And if you want your data back, there are innumerable hoops to jump through. Want it deleted entirely? Good luck.

Tim Berners-Lee, original creator of the World Wide Web, is behind the project.

Sir Tim Berners-Lee, as the original creator of what became the Web, has drawn issue with the current state of play. To move the ball on the issue, he’s been working on a design for decentralized internet and the efforts have led to the establishment of the Solid project. The goal is to rectify online privacy and ownership issues and give users greater control over their personal data.

The big question is how do you do that? When SOLID was announced last year there were few if any details on the approach taken by the program. But since then, more details have surface and you can even take an early version of the program for a spin. Let’s take a look.

Continue reading “SOLID Promises A New Approach To How The Web Works”

Coronavirus Testing Follow-Up: Rapid Immunologic Testing

When I started writing my recent article on COVID-19 testing, I assumed that I would be doing a compare and contrast sort of article. Like many people, I assumed that the “gold standard” test would be the reverse transcriptase-polymerase chain reaction (RT-PCR) test that I described in some detail. And indeed it is, but it’s not without its problems, such as the lack of certified labs and the need for trained technicians to run the samples. I also assumed there would be another test, a simple serological test that could use antibodies to discern if there was an active or even a previous, resolved infection.

At the time I wrote the first article, I could find no indication of an immunologic test for COVID-19 (more specifically, a test for SARS-Cov-2, the virus that causes COVID-19). But almost as rapidly as the number of COVID-19 cases rises, the news changes, and it appears that simple, rapidly performed antibody tests are now or soon will be available. They likely won’t replace the gold standard RT-PCR test, but they do stand to be a game-changer for the front line providers and the victims of this disease. So it pays to take a quick look at immunoassays for infectious diseases, and learn how they work.

Continue reading “Coronavirus Testing Follow-Up: Rapid Immunologic Testing”

Phantom Express: The Spaceplane That Never Was

Even for those of us who follow space news closely, there’s a lot to keep track of these days. Private companies are competing to develop new human-rated spacecraft and assembling satellite mega-constellations, while NASA is working towards a return the Moon and the first flight of the SLS. Between new announcements, updates to existing missions, and literal rocket launches, things are happening on a nearly daily basis. It’s fair to say we haven’t seen this level of activity since the Space Race of the 1960s.

With so much going on, it’s no surprise that not many people have heard of the XS-1 Phantom Express. A project by the United States Defense Advanced Research Projects Agency (DARPA), the XS-1 was designed to be a reusable launch system that could put small payloads into orbit on short notice. Once its mission was complete, the vehicle was to return to the launch site and be ready for re-flight in as a little as 24 hours.

Alternately referred to as the “DARPA Experimental Spaceplane”, the vehicle was envisioned as being roughly the size of a business jet and capable of carrying a payload of up to 2,300 kilograms (5,000 pounds). It would take off vertically under rocket power and then glide back to Earth at the end of the mission to make a conventional runway landing. At $5 million per flight, its operating costs would be comparable with even the most aggressively priced commercial launch providers; but with the added bonus of not having to involve a third party in military and reconnaissance missions which would almost certainly be classified in nature.

Or at least, that was the idea. Flight tests were originally scheduled to begin this year, but earlier this year prime contractor Boeing abruptly dropped out of the program. Despite six years in development and over $140 million in funding awarded by DARPA, it’s now all but certain that the XS-1 Phantom Express will never get off the ground. Which is a shame, as even in a market full of innovative launch vehicles, this unique spacecraft offered some compelling advantages.

Continue reading “Phantom Express: The Spaceplane That Never Was”

What Does GitHub’s Npm Acquisition Mean For Developers?

Microsoft’s open-source shopping spree has claimed another victim: npm. [Nat Friedman], CEO of GitHub (owned by Microsoft), announced the move recently on the GitHub blog.

So what motivated the acquisition, and what changes are we likely to see as a result of it? There are some obvious upsides and integrations, but these will be accompanied by the usual dose of skepticism from the open-source community. The company history and working culture of npm has also had its moments in the news, which may well have contributed to the current situation. This post aims to explore some of the rationale behind the acquisition, and what it’s likely to mean for developers in the future.

Continue reading “What Does GitHub’s Npm Acquisition Mean For Developers?”

Stay Informed: How To Pull Your Own COVID-19 Data

For all the technology we have, it can still be frustratingly difficult to get any concrete information from the media. Sometimes all you want to do is to cut through the noise and see some real numbers. Watching talking heads argue for a half hour probably isn’t going to tell you much about how the COVID-19 virus is spreading through your local community, but seeing real-time data pulled from multiple vetted sources might.

Having access to the raw data about COVID-19 cases, fatalities, and recoveries is, to put it mildly, eye-opening. Even if day to day life seems pretty much unchanged in your corner of the world, seeing the rate at which these numbers are climbing really puts the fight into perspective. You might be less inclined to go out for a leisurely stroll if you knew how many new cases had popped up in your neck of the woods during the last 24 hours.

But this article isn’t about telling you how to feel about the data, it’s about how you can get your hands on it. What you do with it after that is entirely up to you. Depending on where you live, the numbers you see might even make you feel a bit better. It’s information on your own terms, and in these uncertain times, that might be the best we can hope for.

Continue reading “Stay Informed: How To Pull Your Own COVID-19 Data”

Geofence Warrant Sends Bicyclist’s Privacy Over The Handlebars

About a year ago, Zachary McCoy took a bike ride around his neighborhood in Gainesville, Florida. It may have been forgettable to him, but not to history. Because McCoy used an app to track his mileage, the route was forever etched in the Google-verse and attached to his name.

On the day of this ill-fated bike ride, McCoy passed a certain neighbor’s house three times. While this normally wouldn’t raise alarm, the neighbor happened to be the victim of a burglary that day, and had thousands of dollars worth of jewelry stolen. The Gainesville police had zero leads after a four-day investigation, so they went to the county to get a geofence warrant. Thanks to all the location data McCoy had willingly generated, he became the prime suspect.

Continue reading “Geofence Warrant Sends Bicyclist’s Privacy Over The Handlebars”